[ANNOUNCEMENT] Updated: R-3.6.2-1

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[ANNOUNCEMENT] Updated: R-3.6.2-1

marco atzeri-4
Versions 3.6.2-1  of
         R
         libRmath
         libRmath-devel

for cygwin are now available:


CHANGES
Latest upstream release
https://mailman.stat.ethz.ch/pipermail/r-announce/2019/000647.html

DESCRIPTION
R is a language and environment for statistical computing and graphics.

R provides a wide variety of statistical (linear and nonlinear
modelling, classical statistical tests, time-series analysis,
classification, clustering, ...) and graphical techniques, and
is highly extensible.
The S language is often the vehicle of choice for research in
statistical methodology, and R provides an Open Source route
to participation in that activity.

HOMEPAGE
http://www.r-project.org/


Marco Atzeri

If you have questions or comments, please send them to the
cygwin mailing list at: cygwin (at) cygwin (dot) com .

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Re: [ANNOUNCEMENT] Updated: R-3.6.2-1

Steven Penny
On Sat, 14 Dec 2019 19:42:08 +0100, Marco Atzeri wrote:
> Versions 3.6.2-1  of
> R
> libRmath
> libRmath-devel
>
> for cygwin are now available:

Currently, including transitive dependency "R" pulls in 73 packages:

     2,513,500 dejavu-fonts
        73,920 desktop-file-utils
        52,608 gamin
       502,752 gsettings-desktop-schemas
        54,360 libbrotlicommon1
        18,272 libbrotlidec1
       659,160 libcairo2
         4,132 libcom_err2
        20,804 libcrypt0
       233,752 libcurl4
         9,648 libdatrie1
       883,388 libdb5.3
        55,100 libexpat1
        11,592 libfam0
       105,768 libfontconfig1
       212,692 libfontconfig-common
       398,000 libfreetype6
       404,012 libgfortran4
     3,044,044 libglib2.0_0
        59,080 libgomp1
        76,288 libgraphite2_3
       102,828 libgssapi_krb5_2
       351,240 libharfbuzz0
       114,012 libICE6
     8,151,228 libicu65
        50,980 libidn2_0
        23,200 libjbig2
       102,812 libjpeg8
        73,344 libk5crypto3
       236,076 libkrb5_3
        14,424 libkrb5support0
     2,108,364 liblapack0
        38,024 liblzo2_2
        52,312 libnghttp2_14
     1,073,760 libopenblas
       149,684 libopenldap2_4_2
           108 libopenssl100
       213,668 libpango1.0_0
       221,460 libpixman1_0
        19,432 libpkgconf3
       171,416 libpng16
        50,452 libpsl5
       133,328 libquadmath0
       131,228 libsasl2_3
        83,924 libSM6
       157,744 libssh4
        15,608 libssh-common
       174,636 libthai0
       138,344 libtiff6
        68,708 libtirpc3
         7,004 libtirpc-common
       385,472 libunistring2
       773,720 libX11_6
        19,104 libXau6
       109,596 libxcb1
         9,260 libxcb-render0
         3,060 libxcb-shm0
        48,368 libXdmcp6
        83,568 libXext6
        44,768 libXft2
       700,436 libxml2
        88,912 libXmu6
        26,520 libXrender1
        13,540 libXss1
       479,252 libXt6
        25,124 pkgconf
         5,972 pkg-config
        38,224 publicsuffix-list-dafsa
    43,025,128 R
           220 R_autorebase
       303,688 shared-mime-info
     1,503,048 tcl
     1,407,028 tcl-tk

From my testing only these are needed for a minimal program:

- libgomp1
- libicu65
- liblapack0
- libopenblas
- libtirpc3
- R

Could we release an "R_base" similar to "perl_base"? I have no need for "X".


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Re: [ANNOUNCEMENT] Updated: R-3.6.2-1

marco atzeri-4
Am 15.12.2019 um 17:17 schrieb Steven Penny:

> On Sat, 14 Dec 2019 19:42:08 +0100, Marco Atzeri wrote:
>> Versions 3.6.2-1  of
>> R
>> libRmath
>> libRmath-devel
>>
>> for cygwin are now available:
>
> Currently, including transitive dependency "R" pulls in 73 packages:
>
>      2,513,500 dejavu-fonts
>         73,920 desktop-file-utils
>         52,608 gamin
>        502,752 gsettings-desktop-schemas
>         54,360 libbrotlicommon1
>         18,272 libbrotlidec1
>        659,160 libcairo2
>          4,132 libcom_err2
>         20,804 libcrypt0
>        233,752 libcurl4
>          9,648 libdatrie1
>        883,388 libdb5.3
>         55,100 libexpat1
>         11,592 libfam0
>        105,768 libfontconfig1
>        212,692 libfontconfig-common
>        398,000 libfreetype6
>        404,012 libgfortran4
>      3,044,044 libglib2.0_0
>         59,080 libgomp1
>         76,288 libgraphite2_3
>        102,828 libgssapi_krb5_2
>        351,240 libharfbuzz0
>        114,012 libICE6
>      8,151,228 libicu65
>         50,980 libidn2_0
>         23,200 libjbig2
>        102,812 libjpeg8
>         73,344 libk5crypto3
>        236,076 libkrb5_3
>         14,424 libkrb5support0
>      2,108,364 liblapack0
>         38,024 liblzo2_2
>         52,312 libnghttp2_14
>      1,073,760 libopenblas
>        149,684 libopenldap2_4_2
>            108 libopenssl100
>        213,668 libpango1.0_0
>        221,460 libpixman1_0
>         19,432 libpkgconf3
>        171,416 libpng16
>         50,452 libpsl5
>        133,328 libquadmath0
>        131,228 libsasl2_3
>         83,924 libSM6
>        157,744 libssh4
>         15,608 libssh-common
>        174,636 libthai0
>        138,344 libtiff6
>         68,708 libtirpc3
>          7,004 libtirpc-common
>        385,472 libunistring2
>        773,720 libX11_6
>         19,104 libXau6
>        109,596 libxcb1
>          9,260 libxcb-render0
>          3,060 libxcb-shm0
>         48,368 libXdmcp6
>         83,568 libXext6
>         44,768 libXft2
>        700,436 libxml2
>         88,912 libXmu6
>         26,520 libXrender1
>         13,540 libXss1
>        479,252 libXt6
>         25,124 pkgconf
>          5,972 pkg-config
>         38,224 publicsuffix-list-dafsa
>     43,025,128 R
>            220 R_autorebase
>        303,688 shared-mime-info
>      1,503,048 tcl
>      1,407,028 tcl-tk
>
>  From my testing only these are needed for a minimal program:
>
> - libgomp1
> - libicu65
> - liblapack0
> - libopenblas
> - libtirpc3
> - R

Hi Steven,
these are the dependencies of the DLL

$ cyg-dependency /usr/bin/libR.dll
/usr/bin/cygblas-0.dll /usr/lib/lapack/cygblas-0.dll  =>
liblapack0-3.8.0-1 libopenblas-0.3.7-1
/usr/bin/cygbz2-1.dll  =>  libbz2_1-1.0.8-1
/usr/bin/cygwin1.dll  =>  cygwin-3.0.7-1
/usr/bin/cygiconv-2.dll  =>  libiconv2-1.14-3
/usr/bin/cygicui18n65.dll  =>  libicu65-65.1-1
/usr/bin/cygicuuc65.dll  =>  libicu65-65.1-1
/usr/bin/cygintl-8.dll  =>  libintl8-0.19.8.1-2
/usr/bin/cyglzma-5.dll  =>  liblzma5-5.2.4-1
/usr/bin/cygpcre-1.dll  =>  libpcre1-8.43-1
/usr/bin/cygreadline7.dll  =>  libreadline7-7.0.3-3
/usr/bin/cygtirpc-3.dll  =>  libtirpc3-1.1.4-1
/usr/bin/cygz.dll  =>  zlib0-1.2.11-1
/usr/bin/cyggcc_s-seh-1.dll  =>  libgcc1-7.4.0-1
/usr/bin/cyggomp-1.dll  =>  libgomp1-7.4.0-1
KERNEL32.dll  =>   Windows System

>
> Could we release an "R_base" similar to "perl_base"? I have no need for
> "X".

I will look if some of the "usr/lib/R/library" can be packed separately.
It could take some time...


Regards
Marco




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Re: [ANNOUNCEMENT] Updated: R-3.6.2-1

marco atzeri-4
Am 15.12.2019 um 18:00 schrieb Marco Atzeri:

> Am 15.12.2019 um 17:17 schrieb Steven Penny:
>> On Sat, 14 Dec 2019 19:42:08 +0100, Marco Atzeri wrote:
>>> Versions 3.6.2-1  of
>>> R
>>> libRmath
>>> libRmath-devel
>>>
>>> for cygwin are now available:
>>
>> Currently, including transitive dependency "R" pulls in 73 packages:
>>
...

>>
>>  From my testing only these are needed for a minimal program:
>>
>> - libgomp1
>> - libicu65
>> - liblapack0
>> - libopenblas
>> - libtirpc3
>> - R
>
> Hi Steven,
> these are the dependencies of the DLL
>
> $ cyg-dependency /usr/bin/libR.dll
> /usr/bin/cygblas-0.dll /usr/lib/lapack/cygblas-0.dll  =>
> liblapack0-3.8.0-1 libopenblas-0.3.7-1
> /usr/bin/cygbz2-1.dll  =>  libbz2_1-1.0.8-1
> /usr/bin/cygwin1.dll  =>  cygwin-3.0.7-1
> /usr/bin/cygiconv-2.dll  =>  libiconv2-1.14-3
> /usr/bin/cygicui18n65.dll  =>  libicu65-65.1-1
> /usr/bin/cygicuuc65.dll  =>  libicu65-65.1-1
> /usr/bin/cygintl-8.dll  =>  libintl8-0.19.8.1-2
> /usr/bin/cyglzma-5.dll  =>  liblzma5-5.2.4-1
> /usr/bin/cygpcre-1.dll  =>  libpcre1-8.43-1
> /usr/bin/cygreadline7.dll  =>  libreadline7-7.0.3-3
> /usr/bin/cygtirpc-3.dll  =>  libtirpc3-1.1.4-1
> /usr/bin/cygz.dll  =>  zlib0-1.2.11-1
> /usr/bin/cyggcc_s-seh-1.dll  =>  libgcc1-7.4.0-1
> /usr/bin/cyggomp-1.dll  =>  libgomp1-7.4.0-1
> KERNEL32.dll  =>   Windows System
>
>>
>> Could we release an "R_base" similar to "perl_base"? I have no need
>> for "X".
>
> I will look if some of the "usr/lib/R/library" can be packed separately.
> It could take some time...
>
>
> Regards
> Marco
>

Steven,
the Debian core seems equal to my packaging
https://packages.debian.org/buster/r-base-core

that is not very promising.

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Re: [ANNOUNCEMENT] Updated: R-3.6.2-1

Steven Penny
On Sun, 15 Dec 2019 18:11:12 +0100, Marco Atzeri wrote:
> Steven,
> the Debian core seems equal to my packaging
> https://packages.debian.org/buster/r-base-core
>
> that is not very promising.

True, but Fedora is similar to what I am proposing:

    %package core
    Requires: libRmath%{?_isa} = %{version}-%{release}
    Requires: openblas-Rblas
    Requires: perl
    Requires: perl-interpreter
    Requires: redhat-rpm-config
    Requires: sed, gawk, tex(latex), less, make, unzip
    Requires: tex(dvips), vi
    Requires: vim-minimal
    Requires: xdg-utils, cups

    %package core-devel
    Requires: bzip2-devel, libX11-devel, zlib-devel
    Requires: gcc-c++, gcc-gfortran, tex(latex), texinfo-tex
    Requires: libicu-devel
    Requires: pcre2-devel
    Requires: pcre-devel
    Requires: qpdf
    Requires: R-core = %{version}-%{release}
    Requires: tcl-devel, tk-devel, pkgconfig, xz-devel
    Requires: tex(cm-super-ts1.enc)
    Requires: tex(ecrm1000.tfm)
    Requires: tex(inconsolata.sty)
    Requires: tex(pcrr8t.tfm)
    Requires: tex(phvr8t.tfm)
    Requires: tex(ptmb8t.tfm)
    Requires: tex(ptmr8t.tfm)
    Requires: tex(ptmri8t.tfm)
    Requires: tex(ptmro8t.tfm)
    Requires: tre-devel

https://apps.fedoraproject.org/packages/R/sources/spec


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